UO Lockery Lab
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Gene    Neuron                                  Source
-------------------------------------------------------------------------
ace-1   4-6 head nrns, v-cord mtrs              eiwm97.109
acr-5   B-type motor neurons                    //ross iwm97
aex-3   ~all neurons                            Neuron  18:613
apl-1   VA VB, other mtr nrns, head/tail nrns   cli(pc)
alt-1   Ceh IL OL, some amphid nrns HSN PLM     iwm99.473
cat-1   CEP ADF AIM ADE NSM VC4 VC5 PDE CAN...
        HSN RIHf AIYf, (1 pair)f                J Neurosci 19: 72
cat-2   CEPV CEPD ADE PDE R5A R7A R9A           Development 126: 5819
cch-1   MC, some ring neurons                   iwm99.805; ksteger(pc)
cdh-3   VC, HSN                                 ewm96.54
ceh-2   I3 M4 NSM M3                            eiwm97.28
ceh-2   I3 NSM m2 e2 M3                         iwm97.670
ceh-6   RMDV RMDD AUA AVH SABV, excr cell       iwm95.138
ceh-10  RMED RID CEP ALA AVJ AIN AIY            Genetics 148: 151
ceh-14  BDU PVT DVC PHA PHBL PHC PVN PVWp PVRp  
        AFD PHx several head/tail nrns          Neuron 25: 587
ceh-17  ALA, SIAs			        Development 127: 3361
ceh-23  AIY BAG ASI ADL AWC ASE AFD ASH ASG...
        PHx CAN                                 Genetics 148:151
ceh-28* M4                                      bharfe(pc)
ceh-24  sublater & subventral head nrns         ecwm96.29
ceh-36  >= 2 pairs chemo neurons                iwm97.670(pc)
che-1   ASH ASE, a few others                   iwm99.861
che-3   all cileated sensory neurons            early ewm98.p66
cfi-1 	AVD PVC URA IL2 (LUA)			dChelur(pc)
cgk-1   PQR PVQL, but not PVQR                  iwm99.801
cha-1   head: IL2 URA URB SAA SAB SIA SIB SMB..
        SMD RMD RIM, sev more; phar: M1 M2 M5..
        I1f I6f, others; body: VA VB VC DA DB..
        AS SDQ HSNf; tail: ALN PLN others       jduerr(pc), antibody
cnd-1   head nrns, DD DA1-5                     eiwm97.629
cod-5	NSM ADF HSN AIMf RIHf			early ecwm98.184
daf-1   many head nrns incl amphid nrns         eiwm97.206
daf-4   similar to daf-1                        eiwm97.206
daf-7*  ASI                                     Neuron 17:719
daf-19  all ciliated neurons				Mol Cell, in press
dbl-1   CPm, RVG nrns, dorsal rectal gang nrns  wbg 14(2):41
des-2   PVC PVDp IL1p, 2 in tail, 2 in head     mtreinin(pc)
deg-1   AVD AVG IL1 PVC                         J Neurosci 17:1033
deg-3   PVC AVG IL1, touch cells                Neuron 14:871
del-1   VA VB, a few others                     iwm99.840
eat-4   all glutaminergic neurons; OLL OLQ IL1
        ASK ASH AUA AVJ/AIN ADA FLP             J Neurosci 19: 159
eat-16  ~all neurons, phar muscle               iwm99.664
ehs-1   ~all neurons                            iwm99.739
egl-10  ~all neurons                            early ecwm98.90
egl-17* M4                                      iwm97.64
egl-19  many nrns in ring, pre-anal gang        wbg 14(3):50
        AS DD VD DB VB DA VA                    iwm99.909
egl-2   AFD AQR ASE AWC BAG IL2 PQR URX...
        these and others in males               deweinshenker,jthomas(pc)
egl-36  AVL DVB RIA AVE ADE M3 I6 ALN ?PVC      iwm97.463(pc)
egl-5   PLML PLMR, a numer of unid'd nrns       wbg 15(1):49
egl-8   "most neurons"                          iwm99.66
fax-1   CEPD URX  M1 M5 MI (RIC) (AIY) (AVK)    early ecwm98.26
        (SABD) (SABV) PVPL (DVA)
flp-1   AVK CEPD URX DVA PVP, 3 nrns in RVG     Science 281:1686
flp-1*  (promoter fragment) AVK                 c.li(pc); Development 127:703
flp-3   IL1D OLL URB PQR                        iwm99.472
flp-5   ASE RMG                                 iwm99.472
flp-6*  ASE                                     iwm99.472
flp-8   ASE URX PVM                             iwm99.472
flp-12  SMB AVM PVM                             iwm99.472
flp-13	DD					ohobert(pc)
flp-15  I2 I3 PHA                               iwm99.472
flp-3   IL1D OLL URB PQR                        iwm99.472
flr-4   AUA? other head neurons?                iwm97.104(pc)
gcy-10  AWB AWC I1                              Pnas 94:00
gcy-12* PHA                                     Pnas 94:00
gcy-32  URX AQR PQR                             Pnas 94:00
gcy-33* BAG                                     Pnas 94:00
gcy-5** ASER                                    Pnas 94:00
gcy-6** ASEL                                    Pnas 94:00
gcy-7** ASEL                                    Pnas 94:00
gcy-8*  AFD                                     Pnas 94:00
ggr-1   (C09G5) AIB PVR PVQ AVH SMDV...
        some ventral cord mtr nrns              wbg 14(4):69
ggr-2   (C45B2) SMDV, SMDD, SIAV, CAN, HSN, DD  wbg 14(4):69
ggr-3   (F09C12) AVA, AVB, SMDD, DVA, SIAD...
        other neurons in the nerve ring         wbg 14(4):69
glr-1   AVA AVB AVD AVE PVC AIB RMD RIM SMD...
	AVGf PVQf URYf		                Nature 378:82
glr-5*  RIA                                     iwm99.881
glr-7*  RIA                                     iwm99.881
glt-1   M3, eight nrns? male tail, 6 others     ecwm96.110
goa-1   all nrns                                Neuron 20:55

gpa-1   SPD SPV SPC (males only?)               eiwm97.275
gpa-1   ADL ASH ASIf ASJ PHx                    Nat. Gen 21:414
gpa-2*  AWC                                     Genetics 145:715
gpa-3   ADF ADL ASE ASG ASH                     Genetics 145:715
gpa-4*  ASI                                     Nat. Gen 21:414
gpa-5   AWA ASIf                                Nat. Gen 21:414
gpa-6   AWA ASIf PHB                            Nat. Gen 21:414
gpa-7   many nrns, mscls cells, nrns male tail  Nat. Gen 21:414
gpa-8   URX AQR PQR                             Nat. Gen. 21:414
gpa-9   ASJ PHB PVq                             Nat. Gen. 21:414
gpa-10  ADF ASI ASJ ALN CAN LUA                 Nat. Gen. 21:414
gpa-11  ADL ASH pharynx, lat & ventr hypodermis Nat. Gen. 21:414
gpa-13  ADF ASH AWC PHx                         Nat. Gen. 21:414
gpa-14  ASI ASJ ASH ASK ADE PHx ALS AVA CAN...  
        DVA PVQ RIA vulva muscle                Nat. Gen. 21:414
gpa-15  ADL ASH ASK PHx many male nrns...       
	distal tip & anchor cells               Nat. Gen. 21:414
gpa-16  AVM PDE PLM BDU PVC RIP pharynx bwm...  
	vulva muscle                            Nat. Gen. 21:414
gpb-2   HSN, others                             iwm99.866
gsa-1   all nrns          Genes Devel. 11:1493; Gene 194:183
ham-2   HSN, other nrns in head and tail        eiwm97.43
her-1   CP9m                                    mwwm96.85
ida-1   Many ring neurons, VCn HSN PHx uv1      iwm99.943(pc)
ina-1   sens nrns head/tail, lcord, vcord       wcwm96.50
lim-4   AWB, RMEV RMDL/R, RID, RIV, SIA, SAA    Genes Dev. 13: 1794
lim-6   ASG AWA (a promoter derivative)         O.Hobert(pc)
lim-6   ASEL, RMEL/R, AVL, RIS, DVB             Development 126: 1547
lim-7   IL1s, OLQs (?)                          O.Hobert(pc)
lin-11  ADL ADF AVH (or AVJ) AVG AIZ RIC VC...  
	PHA PVQ                                 J Neurosci 18: 2084
lin-4   (ALA) HSN, many head and tail neurons   early ecwm98.108
lin-45  a few neurons in the head               ecwm96.53
mab-18  preanal ganglion nrns                   wbg 14(3):36
mec-3   touch cells, FLP, PVD                   Genes & Devel 3:1823
mec-7   touch cells, weak expressn other nrns   Devel 119:773
mec-8   head neurons(incl amphid) tail neuron   iwm97.594(pc)
mec-9   touch cells, PVD                        Neuron 16:183
mec-18  touch cells                             ggu & mchalfie(pc)
mgl-1   RMDV RMD RMDD RIB AIA (ANL) (AIY)       iwm97.475(pc)
mgl-2   RMD RMDV RMDD (SMDV) AVE (SMDD) AIB...
        RIB some tail neurons                   iwm97.475(pc)
mig-1   HSN QR QL SIA SIB bwm                   iwm97.611
mig-13  ~10 v-cord nrns                         wcwm96.168
mus-1   RIB RIM AVEL AVA ADA/RMG RIV M4-5 I2 I1 iwm99.740
ncs-1   AVK AWB AWC ASE BAG PHB AIY RMG...      
	m1 (AFD) (ADF) (ASG) (AWA)              iwm97.590(pc)
nhr-22  AWC and 9 pairs sensory neurons         early ecwm98.133
nhr-38* AFD                                     early ecwm98.133
nhr-79  ADL ASH                                 iwm99.592
nmr-1   AVA AVD AVE PVC RIM                     iwm99.534
ocr-1   AWA ADLf                                iwm99.849
ocr-2   ASH ADL PHx AWA ADF                     iwm99.849
odr-1   AWC ASI AWB ASK ASJ                     iwm97.420
odr-2 2b AIB AIZ IL2 RIG AVG PVP ASG	Chou et al. 2001 Genetics
odr-2 2b AIB AIZ (RIF) (ASG)			iwm05.466
odr-2 18 SMB					Chou et al. 2001 Genetics
odr-10* AWA                                     Cell 84:899
odr-3   AWA AWB AWC                             Cell 91:161
odr-3   AWA AWB AWC ASHc ADFc                   Neuron 20:55
odr-7*  AWA                                     Cell 79:971
opt-3*  AVA					J Biol Chem 275, 9563
opt-3*	AVE					iwm05.641	
osm-10  ASH ASI PHA PHB                         J Neurosci 19:1952
osm-3   IL2D IL2V IL2                           siddiqui(pc)
osm-9   OLQ ADL AWA IL2 AWC ASE ADF ASG ASH...
        ASK FLP PVD PHx                         J Neurosci 17:8259
pag-3   the 6 touch nrns                        iwm99.575
pef-1	AWB AWC AVA AVB AVX?? BAG URX (ASE)	J Biological Chem 276:25127
pha-1   neurons                                 eiwm97.132
pin-2   PVT, head sensory neuron(s)		J Cell Biol 144: 45
rab-3   ~all neurons                            J Neurosci 17:8061
ric-19  ~all neurons                            MBC 11: 3277
sak-1   BDU SDQ ALM CAN HSN PDE PVD AVM, others eiwm97.239
sdf-13  pharyngeal neruons                      ikatsura (pc)
sek-1   VCs, touch cells                        iwm99.829
sek-2   BDU SDQ ALM CAN HSN PDE PVD AVM, others eiwm97.239
sgs-1   "general neuronal expression"           early ewm98.56***************
snb-1   ~all neurons                            J Neurosci 18:70
snt-1   ~all neurons                            Cell 73:1291
sra-1   SPDm/SPVm                               Cell 83:207
sra-10  URX ALS (phar nrns)                     Cell 83:207
sra-11  AIY AVB (and 1 pharyngeal nrn)          Cell 83:207
sra-6   ASIf ASH SPDm/SPVm PVQ                  Cell 83:207
sra-7*  ASK                                     Cell 83:207
sra-9*  ASK                                     Cell 83:207
srb-6   ADL ADFf ASH PHx                        Cell 83:207
srg-2*  ASK                                     Cell 83:207
srg-8*  ASK                                     Cell 83:207
srd-1   ASI ADFm R8m/R9m?                       Cell 83:207
sre-1   ADL ASJf                                Cell 83:207
srg-13* PHA                                     Cell 83:207
sro-1   ADL SIA                                 Cell 83:207
str-1*  AWB                                     Cell 91:161
str-2** AWCL or AWCR                            wcwm98.28
str-3*  ASI                                     ?
syn-2   some v-cord nrns, some head nrns        ecwm96.91
tab-1   AIB RIV AVJ                             iwm99.224
tax-2   AWC AFD ASE ASG ASJ ADE BAG ASK ASI...  Neuron 17:695
        AWB, occasionally: PQR PHAorB           Neuron 17:695
        related constructs label subsets        Neuron 17:695
tax-4   ASE ASG ASI ASK URX AWB BAG AFD AWC ASJ Neuron 17:707
tig-2   pharyngeal nrns, ventral cord nrns      iwm99.564
tph-1   serotonergic neurons NSM ADF HSN CPm    iwm99.822
ttx-3*  AIY                                     iwm97.40
ttx-3	AIY AIA ASI ADL				zaltun-gultekin, Development, in press
unc-3   ASI DB DA VB VA AS                      iwm97.228
unc-4   SAB DA I5 VA AVF VC                     Development 121:2877(pc)
unc-5   DA DB DD VD AS OLQ OLL IL2 RIA RIH ASE  Development 127, 585

unc-8   BDU SABD PVM PVC AVB AVA AVD AVE AVJ...
        PDA PDB DA DB DD VD VC VB HSN ASH FLP...
        AVG AIB AIN AIZ, some other nrns        ecwm96.20
unc-8   interneurons mtr neurons [c]            iwm97.110(pc)
unc-11  ~all neurons                            aalfonso,mnonet(pc)
unc-17  head: IL2 URA URB SAA SAB SIA SIB SMB..
        SMD RMD RIM, AIA sev more; phar: M1 M2 M5..
        I1f I6f, others; body: VA VB VC DA DB..
        AS SDQ HSNf; tail: ALN PLN others	jduerr(pc); zaltun-gultekin et
        al. Development, in press
unc-18  neuron specific, no id's                eiwm97.221
unc-25  DD VD AVL DVB RME RIS                   J Neurosci 19: 6225
unc-29  VCs                                     iwm99.878
unc-30  DD VD ASG RIDa RIHa                     Nature 372:780
unc-37  ~all: nrns, somatic, grm-line cells     Development 124:1699
unc-40  AVM PVM HSN PVD PHx ADEp PDEp...
        ~all mtr nrns, 2-3 lumbar nrns...
        1 labial nrn, RIMp or RICp or AVBp      wbg 14(1):53
unc-43  many head/tail nrns, v.cord nrns, HSN   early wcwm98.121
unc-47  DD VD AVL DVB RME RIS                   Nature 389, 870
unc-55  VDs                                     iwm99.885
unc-64  ~all neurons                            mnonet(pc)
unc-86  UNC-86 in 57 nrns: incl. touch AIZ HSN  eiwm97.584
unc-97  touch sensory neurons (ALM, PLM etc.)	J Cell Biol 144: 45
unc-103 HSN (VAs, VBs, ASs most likely,..
        VDs possible but less likely) NSM I2...
        I1 AUA ADL ASK ALA ASJf URX SIA SMD...
        IL2 URA URY OLQ PHA ALN PVP DVC ADE...
        PDE PVD AVHp AVJp AVDp AINp ADAp RMGp..
        RICp FLPp AIYp -AVL -DVB -DVA ...
        //8 vulv mus 8 uterine muscles...       dreiner(pc)
unc-115 ~all neurons                            wcwm96.53
unc-116 RMG  RIFL RIS ADA ADE AIM AIY AVA...
        AVB PVT PDB PDA, others.                wbg 14(5).70
unc-119 ~all neurons                            Genetics 141:977
unc-129 DA DB some head neurons                 iwm97.56
vab-7   DB, two head neurons                    iwm97.570

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Unnamed
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(ZC506.4) RMD AIA PVQ, others			wbg 14(3).40
(F19C6) AWC ASE ASH ASI ASJ ASK, others		wcwm96.94
(WO2B3) many head/tail, esp. intr, mtrs		wcwm96.94
(F53H8) AWC HSN, many other nrns		wcwm96.94
(R13A1_4pGFP) PDA PDB DA DB DD VD...    
        AVA AVD AVE AVJ AVG AIB AIN and AIZ..   
        VC VB HSN ASH BDU SABD PVM PVC AVB      wbg 14(3):47
(C16E9) a few nrns; eat-5-like connexn		mwwm96.38
(???) RME VD DD					wcwm96.123
(F59B2.13) DVA DVB DVC RMED RMEV		acedb
(T23G5.5) ADE CEPD CEPV PDE			acedb
(H20) ~all neurons				tishihara(pc)
(ZC21.2) RMD SMD RIA RIB BAG AVA SIA VCs        J Neurosci 17:8259
(C01C4.1) ASI ASE AWC PHB			early ecwm98.136
(C05B5.7) ~all neurons				early ecwm98.90
(C41G11.3) ~all neurons				early ecwm98.90
(C29H12.3) seven amphid nrns PHA PHB		early ecwm98.90
(F13B12) phar nrn, several head/tail		early ecwm98.150
(M7.13) ASI					Genes & Devel. 13:1794
(F47C12.5) ADL					Genes & Devel. 13:1794
(T08G3.3) ADF 					Genes & Devel. 13:1794
(F52E4.4) DVA, if promoter tweaked		Neuroscience 103:853
(F19D8.1 RIG, if pomoter tweaked		Neuroscience 103:853
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Notes
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Data are for the hermaphrodite unless noted.
Expression in extra-neural tissue has not yet been included.
Expression patterns as detected by GFP expression unless noted.

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Key
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~all    Most or all
XXXf    Faint labeling
XXm     Male expression
XXx     All cell types with these two first letters
l       Larval expression only
..      List continued on next line
...     List continued on next line
c       Conflict with other data on the same promotor, also [c]
(XXX)   Faint or identity unsure (if my notes are unclear which)
XXXp    Preliminary identification
*       Single cell-type labeled with constructs using this promoter
-       Definitely not expressed in this cell
nrn     Neuron
intr    Interneuron
mtr     Motor neuron
bwm     body wall muscle
eiwm    Early international wm abstract
wcwm    West coast worm meeting
mwwm    Mid west worm meeting
ecwm    East coast worm meeting
ewm     European worm meeting
(pc)    Personal communication
(ip)    In press
SFNabs97.000    Abstr. Soc. NeurosciYY.NNN


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This catalog is a work in progress...Help make it better

Please submit corrections and new entries to:
Oliver Hobert
Shawn Lockery
---------------------------------------------------------------------------- Check the genes you work on (search your name in case no gene name given). Submit new information as it comes available. Catch errors. ------------------------------------------------------------------------- Search strategy in C. elegans server (remove spurious return chars) ------------------------------------------------------------------------- http://eatworms.swmed.edu/htbin/wbgart/?terms=neuron+and+expression+and +gfp&partword=yes&mlogic=any&source=&helpfile=formhelp.shtml &backURL=%2Fhtbin%2Fwbgart%2F ------------------------------------------------------------------------- Improvements needed ------------------------------------------------------------------------- Indicate integrated lines. Indicate marker background. Add email box and plea to web posting. ----------------------------------------------------------------------- Credits ----------------------------------------------------------------------- This list is currently maintained by: Oliver Hobert: or38@columbia.edu Serge Faumont Shawn Lockery: shawn@lox.uoregon.edu ----------------------------------------------------------------------- last updated: 15 Jun 2001

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